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    MSL6 mechanosensitive channel of small conductance-like 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844197, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MSL6
    Official Full Name
    mechanosensitive channel of small conductance-like 6
    Primary source
    TAIR:AT1G78610
    Locus tag
    AT1G78610
    See related
    Araport:AT1G78610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    mechanosensitive channel of small conductance-like 6; T30F21.6; T30F21_6
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    Genomic context

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    See MSL6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (29568961..29572572, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NAD(H) kinase 3 Neighboring gene light-regulated zinc finger protein 1 Neighboring gene integral membrane protein (Protein of unknown function DUF92, transmembrane) Neighboring gene Ribosomal protein L13 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    5. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_106508.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    mechanosensitive channel of small conductance-like 6
    NP_177982.1
    • mechanosensitive channel of small conductance-like 6 (MSL6); INVOLVED IN: transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 4 (TAIR:AT1G53470.1); Has 3617 Blast hits to 3602 proteins in 1077 species: Archae - 172; Bacteria - 2574; Metazoa - 1; Fungi - 205; Plants - 217; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29568961..29572572 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106508.3 → NP_177982.1  mechanosensitive channel of small conductance-like 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177982.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SYM1
      UniProtKB/TrEMBL
      A0A178WIR7, A0A5S9WVI4
      Conserved Domains (1) summary
      cl39057
      Location:661 → 819
      MS_channel; Mechanosensitive ion channel
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SYM1.1

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