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    NG1 Pentatricopeptide repeat (PPR-like) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842570, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NG1
    Official Full Name
    Pentatricopeptide repeat (PPR-like) superfamily protein
    Primary source
    TAIR:AT1G62720
    Locus tag
    AT1G62720
    See related
    Araport:AT1G62720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtNG1; F23N19.8; F23N19_8; novel gene 1; pentatricopeptide repeat protein 2; PPR2
    Summary
    Encodes a PPR protein gene that localizes to the mitochondrion and is required for seed germination.
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    Genomic context

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    See NG1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (23227532..23229150)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NAC (No apical meristem) domain transcriptional regulator superfamily protein Neighboring gene ncRNA Neighboring gene beta vacuolar processing enzyme Neighboring gene ncRNA Neighboring gene Terpenoid synthases superfamily protein Neighboring gene stress-inducible protein Neighboring gene Translation elongation factor EFG/EF2 protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtNG1 encodes a protein that is required for seed germination. Yang L, et al. Plant Sci, 2011 Oct. PMID 21889052
    2. MicroRNA400-guided cleavage of Pentatricopeptide repeat protein mRNAs Renders Arabidopsis thaliana more susceptible to pathogenic bacteria and fungi. Park YJ, et al. Plant Cell Physiol, 2014 Sep. PMID 25008976
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MicroRNA400-mediated dysfunction of pentatricopeptide repeat (PPR) proteins renders Arabidopsis more susceptible to pathogenic bacteria and fungi, which emphasizes the importance of PPR proteins in plant defense against diverse pathogens.
      Title: MicroRNA400-guided cleavage of Pentatricopeptide repeat protein mRNAs Renders Arabidopsis thaliana more susceptible to pathogenic bacteria and fungi.
    2. AtNG1 plays a critical role in the early process of seed germination.[AtNG1]
      Title: AtNG1 encodes a protein that is required for seed germination.
    Submit: New GeneRIF Correction

    General gene information

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    NM_104949.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within seed germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR-like) superfamily protein
    NP_176459.2
    • Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62680.1); Has 62070 Blast hits to 15065 proteins in 304 species: Archae - 4; Bacteria - 67; Metazoa - 643; Fungi - 921; Plants - 58400; Viruses - 0; Other Eukaryotes - 2035 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23227532..23229150
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104949.2 → NP_176459.2  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176459.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NKY2, Q9SI78
      UniProtKB/TrEMBL
      A0A178WIB7, A0A654ELZ7
      Conserved Domains (4) summary
      TIGR00756
      Location:418 → 451
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:246 → 273
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:308 → 340
      PPR_1; PPR repeat
      pfam13041
      Location:277 → 326
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SI78.1

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