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    SHL1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830065, updated on 18-Sep-2024

    Summary

    Official Symbol
    SHL1
    Official Full Name
    PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
    Primary source
    TAIR:AT4G39100
    Locus tag
    AT4G39100
    See related
    Araport:AT4G39100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    short life; T22F8.2
    Summary
    Putative transcription factor containing a PHD finger and BAH motif, required for normal development
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    Genomic context

    See SHL1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (18217629..18220324, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene vacuolar proton ATPase A3 Neighboring gene Papain family cysteine protease Neighboring gene miscRNA Neighboring gene Malectin/receptor-like protein kinase family protein

    Interactions

    General gene information

    NM_001204030.2
    NM_120070.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
    NP_001190959.1
    • short life (SHL1); CONTAINS InterPro DOMAIN/s: Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G22140.1).
    NP_568053.1
    • short life (SHL1); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G22140.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18217629..18220324 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001204030.2 → NP_001190959.1  PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190959.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JV93
      Conserved Domains (1) summary
      cl02608
      Location:23 → 157
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
    2. NM_120070.3 → NP_568053.1  PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568053.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L975, Q9FEN9, Q9SVI4
      UniProtKB/TrEMBL
      A0A178UWF3, A0A5S9XZY6, A0A654FWY5
      Conserved Domains (2) summary
      cl02608
      Location:23 → 157
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
      cl22851
      Location:141 → 187
      PHD_SF; PHD finger superfamily
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