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    RNA-binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824818, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Primary source
    TAIR:AT3G56510
    Locus tag
    AT3G56510
    See related
    Araport:AT3G56510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (20943928..20946839, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene myosin heavy chain-like protein Neighboring gene ncRNA Neighboring gene HIS triad family protein 3 Neighboring gene serine-rich protein-like protein Neighboring gene NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Neighboring gene NAC domain containing protein 64

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. E3 ligase ATL5 positively regulates seed longevity by mediating the degradation of ABT1 in Arabidopsis. He W, et al. New Phytol, 2023 Sep. PMID 37337822
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001035796.1
    NM_001339798.1
    NM_001339799.1
    NM_001339800.1
    NM_115509.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding (RRM/RBD/RNP motifs) family protein
    NP_001030873.1
    • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: TATA-binding protein binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_191210.2
    • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: TATA-binding protein binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 528 Blast hits to 522 proteins in 214 species: Archae - 0; Bacteria - 2; Metazoa - 211; Fungi - 183; Plants - 47; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20943928..20946839 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115509.3 → NP_191210.2  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191210.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJF3, A0A5S9XM27, Q6NM71
      Conserved Domains (1) summary
      cd12263
      Location:50 → 146
      RRM_ABT1_like; RNA recognition motif (RRM) found in activator of basal transcription 1 (ABT1) and similar proteins

    2. NM_001339799.1 → NP_001326048.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJF3, A0A5S9XM27, Q6NM71
      Conserved Domains (1) summary
      cd12263
      Location:50 → 146
      RRM_ABT1_like; RNA recognition motif (RRM) found in activator of basal transcription 1 (ABT1) and similar proteins

    3. NM_001339798.1 → NP_001326047.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJF3, A0A5S9XM27, Q6NM71
      Conserved Domains (1) summary
      cd12263
      Location:50 → 146
      RRM_ABT1_like; RNA recognition motif (RRM) found in activator of basal transcription 1 (ABT1) and similar proteins

    4. NM_001339800.1 → NP_001326046.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJF3, A0A5S9XM27, Q6NM71
      Conserved Domains (1) summary
      cd12263
      Location:50 → 146
      RRM_ABT1_like; RNA recognition motif (RRM) found in activator of basal transcription 1 (ABT1) and similar proteins

    5. NM_001035796.1 → NP_001030873.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030873.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJF3, A0A5S9XM27, Q6NM71
      Conserved Domains (1) summary
      cd12263
      Location:50 → 146
      RRM_ABT1_like; RNA recognition motif (RRM) found in activator of basal transcription 1 (ABT1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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