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    hypothetical protein (DUF3133) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824808, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF3133)
    Primary source
    TAIR:AT3G56410
    Locus tag
    AT3G56410
    See related
    Araport:AT3G56410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (20916172..20921338, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene WRKY transcription factor-like protein Neighboring gene WRKY DNA-binding protein 70 Neighboring gene ncRNA Neighboring gene Thioredoxin superfamily protein Neighboring gene import inner membrane translocase subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
    2. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001339793.1
    NM_115499.2
    NM_180378.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF3133)
    NP_191200.1
    • Protein of unknown function (DUF3133); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3133 (InterPro:IPR021480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3133) (TAIR:AT5G05190.1); Has 4873 Blast hits to 3554 proteins in 469 species: Archae - 21; Bacteria - 552; Metazoa - 1496; Fungi - 390; Plants - 373; Viruses - 48; Other Eukaryotes - 1993 (source: NCBI BLink).
    NP_850709.1
    • Protein of unknown function (DUF3133); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3133 (InterPro:IPR021480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3133) (TAIR:AT5G05190.1); Has 4900 Blast hits to 3562 proteins in 473 species: Archae - 21; Bacteria - 563; Metazoa - 1503; Fungi - 393; Plants - 371; Viruses - 54; Other Eukaryotes - 1995 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20916172..20921338 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180378.1 → NP_850709.1  hypothetical protein (DUF3133) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850709.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IZF5, Q0WPZ3
      Conserved Domains (1) summary
      pfam11331
      Location:330 → 374
      zinc_ribbon_12; Probable zinc-ribbon domain

    2. NM_115499.2 → NP_191200.1  hypothetical protein (DUF3133) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191200.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XM18, Q0WPZ3, Q9LXZ9
      Conserved Domains (1) summary
      pfam11331
      Location:377 → 421
      zinc_ribbon_12; Probable zinc-ribbon domain

    3. NM_001339793.1 → NP_001325603.1  hypothetical protein (DUF3133) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLR2, Q0WPZ3
    Nucleotide Protein
    Heading Accession and Version

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