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    DIP2 E3 ubiquitin-protein ligase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831903, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DIP2
    Official Full Name
    E3 ubiquitin-protein ligase
    Primary source
    TAIR:AT5G03210
    Locus tag
    AT5G03210
    See related
    Araport:AT5G03210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtDIP2; DBP-interacting protein 2; F15A17.240; F15A17_240
    Summary
    Encodes a small polypeptide contributing to resistance to potyvirus.
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    Genomic context

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    See DIP2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (762604..763480, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene peptide upstream protein Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene Mediator complex, subunit Med7 Neighboring gene senescence regulator (Protein of unknown function, DUF584)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A plant small polypeptide is a novel component of DNA-binding protein phosphatase 1-mediated resistance to plum pox virus in Arabidopsis. Castelló MJ, et al. Plant Physiol, 2011 Dec. PMID 22021419, Free PMC Article
    2. An abscisic acid-responsive protein interaction network for sucrose non-fermenting related kinase1 in abiotic stress response. Carianopol CS, et al. Commun Biol, 2020 Mar 26. PMID 32218501, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_120399.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to virus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase
    NP_195941.2
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      762604..763480 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342692.1 → NP_001331196.1  E3 ubiquitin-protein ligase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9FYM8

    2. NM_120399.3 → NP_195941.2  E3 ubiquitin-protein ligase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195941.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U9P5, Q949Q2
    Nucleotide Protein
    Heading Accession and Version

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