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    voltage-dependent L-type calcium channel subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831517, updated on 18-Sep-2024

    Summary

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    Official Full Name
    voltage-dependent L-type calcium channel subunit
    Primary source
    TAIR:AT5G16550
    Locus tag
    AT5G16550
    See related
    Araport:AT5G16550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQK4.30; MQK4_30
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (5405346..5406887)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Auxin efflux carrier family protein Neighboring gene zinc finger nuclease 3 Neighboring gene Homeodomain-like superfamily protein Neighboring gene ncRNA Neighboring gene glutamine synthetase 1;4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis lipid droplet-associated protein (LDAP) - interacting protein (LDIP) influences lipid droplet size and neutral lipid homeostasis in both leaves and seeds. Pyc M, et al. Plant J, 2017 Dec. PMID 29083105
    2. LDIP cooperates with SEIPIN and LDAP to facilitate lipid droplet biogenesis in Arabidopsis. Pyc M, et al. Plant Cell, 2021 Sep 24. PMID 34244767, Free PMC Article
    3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data identify LDIP as a new player in lipid droplet (LD) biology that modulates both LD size and cellular neutral lipid homeostasis in both leaves and seeds. [LDIP]
      Title: Arabidopsis lipid droplet-associated protein (LDAP) - interacting protein (LDIP) influences lipid droplet size and neutral lipid homeostasis in both leaves and seeds.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_121661.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid droplet formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in lipid droplet IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    voltage-dependent L-type calcium channel subunit
    NP_568333.1
    • unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5405346..5406887
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121661.5 → NP_568333.1  voltage-dependent L-type calcium channel subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568333.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US69, Q94EY7, Q9FFC9
    Nucleotide Protein
    Heading Accession and Version

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