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    F-box/FBD-like domains containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831995, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/FBD-like domains containing protein
    Primary source
    TAIR:AT5G18770
    Locus tag
    AT5G18770
    See related
    Araport:AT5G18770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17K4.20; F17K4_20
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (6261311..6263721)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene tRNA-Pro Neighboring gene RING/U-box superfamily protein Neighboring gene F-box/RNI-like superfamily protein Neighboring gene Ribosomal protein L33 family protein Neighboring gene Cox19-like CHCH family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001343567.1
    NM_121882.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box/FBD-like domains containing protein
    NP_197378.1
    • F-box/FBD-like domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G18780.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6261311..6263721
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121882.4 → NP_197378.1  F-box/FBD-like domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197378.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93ZK9
      UniProtKB/TrEMBL
      A0A178UIP6, A0A5S9Y5C7
      Conserved Domains (4) summary
      smart00579
      Location:388 → 462
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:157 → 177
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:177 → 202
      LRR_2; Leucine Rich Repeat
      pfam00646
      Location:26 → 66
      F-box; F-box domain

    2. NM_001343567.1 → NP_001331254.1  F-box/FBD-like domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UHP8, A0A1P8BDB9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93ZK9.1

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