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    FIP2 potassium channel tetramerization domain-containing protein / pentapeptide repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835591, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FIP2
    Official Full Name
    potassium channel tetramerization domain-containing protein / pentapeptide repeat-containing protein
    Primary source
    TAIR:AT5G55000
    Locus tag
    AT5G55000
    See related
    Araport:AT5G55000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBG8.27; MBG8_27
    Summary
    FH protein interacting protein FIP2
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    Genomic context

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    See FIP2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (22318305..22321805)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene myb domain protein 120

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the arabidopsis formin-like protein AFH1 and its interacting protein. Banno H, et al. Plant Cell Physiol, 2000 May. PMID 10929945
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124882.4
    NM_180862.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    potassium channel tetramerization domain-containing protein / pentapeptide repeat-containing protein
    NP_200311.1
    • FIP2; FUNCTIONS IN: voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646), BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_851193.1
    • FIP2; FUNCTIONS IN: voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646), BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 27525 Blast hits to 9536 proteins in 1229 species: Archae - 302; Bacteria - 20004; Metazoa - 1613; Fungi - 16; Plants - 337; Viruses - 108; Other Eukaryotes - 5145 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22318305..22321805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124882.4 → NP_200311.1  potassium channel tetramerization domain-containing protein / pentapeptide repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200311.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SE95
      UniProtKB/TrEMBL
      A0A5S9YGF6, A0A654GB99
      Conserved Domains (2) summary
      COG1357
      Location:125 → 297
      YjbI; Uncharacterized protein YjbI, contains pentapeptide repeats [Function unknown]
      cd18376
      Location:11 → 99
      BTB_POZ_FIP2-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Arabidopsis thaliana FH protein interacting protein FIP2 and similar proteins

    2. NM_180862.1 → NP_851193.1  potassium channel tetramerization domain-containing protein / pentapeptide repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851193.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K1X9
      Conserved Domains (4) summary
      smart00225
      Location:11 → 101
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00805
      Location:231 → 270
      Pentapeptide; Pentapeptide repeats (8 copies)
      pfam13599
      Location:173 → 253
      Pentapeptide_4; Pentapeptide repeats (9 copies)
      cl02518
      Location:11 → 99
      BTB; BTB/POZ domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SE95.1

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