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    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835601, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
    Primary source
    TAIR:AT5G55100
    Locus tag
    AT5G55100
    See related
    Araport:AT5G55100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MCO15.5; MCO15_5
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (22361035..22364824, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ras-related nuclear protein 4 Neighboring gene mitogen-activated protein kinase kinase kinase 15 Neighboring gene Stigma-specific Stig1 family protein Neighboring gene GDP-L-galactose phosphorylase VITAMIN C DEFECTIVE 5 (VTC5)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis MAS2, an Essential Gene That Encodes a Homolog of Animal NF-κ B Activating Protein, Is Involved in 45S Ribosomal DNA Silencing. Sánchez-García AB, et al. Plant Cell, 2015 Jul. PMID 26139346, Free PMC Article
    2. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001345107.1
    NM_001345108.1
    NM_001345109.1
    NM_001345116.1
    NM_124892.4
    NM_180863.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
    NP_568820.1
    • SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147), SWAP/Surp (InterPro:IPR000061); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_851194.1
    • SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147), SWAP/Surp (InterPro:IPR000061); Has 37493 Blast hits to 21004 proteins in 1134 species: Archae - 58; Bacteria - 2223; Metazoa - 18747; Fungi - 3374; Plants - 2679; Viruses - 122; Other Eukaryotes - 10290 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22361035..22364824 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345112.1 → NP_001331572.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UB20, A0A1P8BEC1

    2. NM_001345113.1 → NP_001331571.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UB20, A0A1P8BEC1

    3. NM_001345111.1 → NP_001331566.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UB26, A0A1P8BE98

    4. NM_001345110.1 → NP_001331573.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UB20, A0A1P8BEC1

    5. NM_001345114.1 → NP_001331570.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UB26, A0A1P8BE98

    6. NM_001345115.1 → NP_001331565.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UB26, A0A1P8BE98

    7. NM_180863.2 → NP_851194.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851194.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GBC5, B9DFN4
      Conserved Domains (2) summary
      smart00648
      Location:151 → 201
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam09750
      Location:3 → 113
      DRY_EERY; Alternative splicing regulator

    8. NM_001345116.1 → NP_001331574.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UB26, A0A1P8BE98

    9. NM_001345107.1 → NP_001331569.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UB20, A0A1P8BEC1

    10. NM_124892.4 → NP_568820.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568820.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GBC5, Q94BN8
      Conserved Domains (2) summary
      smart00648
      Location:151 → 201
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam09750
      Location:3 → 113
      DRY_EERY; Alternative splicing regulator

    11. NM_001345109.1 → NP_001331567.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UB26, A0A1P8BE98

    12. NM_001345108.1 → NP_001331568.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UB20, A0A1P8BEC1
    Nucleotide Protein
    Heading Accession and Version

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