U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Aldolase-type TIM barrel family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836546, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Aldolase-type TIM barrel family protein
    Primary source
    TAIR:AT5G64250
    Locus tag
    AT5G64250
    See related
    Araport:AT5G64250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSJ1.9; MSJ1_9
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (25697354..25699255, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 1,8-cineole synthase Neighboring gene miscRNA Neighboring gene metacaspase 3 Neighboring gene EXORDIUM like 2 Neighboring gene splicing factor Neighboring gene dicarboxylate transporter 2.2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A leucine-rich repeat protein is required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica in Arabidopsis thaliana. Shahollari B, et al. Plant J, 2007 Apr. PMID 17397506
    2. Proteome changes in Arabidopsis thaliana roots upon exposure to Cd2+. Roth U, et al. J Exp Bot, 2006. PMID 17075075
    3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_125821.5
    NM_180932.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nitronate monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to cadmium ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to symbiotic fungus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Aldolase-type TIM barrel family protein
    NP_568988.2
    • Aldolase-type TIM barrel family protein; FUNCTIONS IN: oxidoreductase activity, catalytic activity, nitronate monooxygenase activity; INVOLVED IN: response to cadmium ion, response to symbiotic fungus, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 2-nitropropane dioxygenase, NPD (InterPro:IPR004136); Has 10497 Blast hits to 10450 proteins in 2031 species: Archae - 24; Bacteria - 7204; Metazoa - 23; Fungi - 537; Plants - 70; Viruses - 0; Other Eukaryotes - 2639 (source: NCBI BLink).
    NP_851263.1
    • Aldolase-type TIM barrel family protein; FUNCTIONS IN: oxidoreductase activity, catalytic activity, nitronate monooxygenase activity; INVOLVED IN: response to cadmium ion, response to symbiotic fungus, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 2-nitropropane dioxygenase, NPD (InterPro:IPR004136); Has 10289 Blast hits to 10274 proteins in 2024 species: Archae - 22; Bacteria - 7122; Metazoa - 23; Fungi - 533; Plants - 70; Viruses - 0; Other Eukaryotes - 2519 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25697354..25699255 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125821.5 → NP_568988.2  Aldolase-type TIM barrel family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568988.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GDX4, A0A7G2FML6, Q9FMG0
      Conserved Domains (1) summary
      cd04730
      Location:8 → 232
      NPD_like; 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase ...

    2. NM_180932.2 → NP_851263.1  Aldolase-type TIM barrel family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851263.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FML6, Q8LDF2
      Conserved Domains (2) summary
      COG2070
      Location:6 → 283
      YrpB; NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family [General function prediction only]
      cd04730
      Location:6 → 192
      NPD_like; 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.