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    JAZ12 jasmonate-zim-domain protein 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832214, updated on 18-Sep-2024

    Summary

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    Official Symbol
    JAZ12
    Official Full Name
    jasmonate-zim-domain protein 12
    Primary source
    TAIR:AT5G20900
    Locus tag
    AT5G20900
    See related
    Araport:AT5G20900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22D1.70; F22D1_70; jasmonate-zim-domain protein 12; TIFY3B
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    Genomic context

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    See JAZ12 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (7090704..7092539)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene TCP-1/cpn60 chaperonin family protein Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein Neighboring gene ncRNA Neighboring gene eukaryotic translation initiation factor 2 beta subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structural basis of JAZ repression of MYC transcription factors in jasmonate signalling. Zhang F, et al. Nature, 2015 Sep 10. PMID 26258305, Free PMC Article
    2. Negative feedback control of jasmonate signaling by an alternative splice variant of JAZ10. Moreno JE, et al. Plant Physiol, 2013 Jun. PMID 23632853, Free PMC Article
    3. A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM-domain protein JAZ10 in Arabidopsis. Chung HS, et al. Plant Cell, 2009 Jan. PMID 19151223, Free PMC Article
    4. The ZIM domain mediates homo- and heteromeric interactions between Arabidopsis JAZ proteins. Chini A, et al. Plant J, 2009 Jul. PMID 19309455
    5. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. Fernández-Calvo P, et al. Plant Cell, 2011 Feb. PMID 21335373, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. KEG protein is a positive regulator of JAZ12 stability.
      Title: The RING E3 Ligase KEEP ON GOING Modulates JASMONATE ZIM-DOMAIN12 Stability.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_122098.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    jasmonate-zim-domain protein 12
    NP_197590.1
    • jasmonate-zim-domain protein 12 (JAZ12); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 11 (TAIR:AT3G43440.2); Has 425 Blast hits to 418 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 423; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7090704..7092539
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122098.5 → NP_197590.1  jasmonate-zim-domain protein 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197590.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C5K8
      UniProtKB/TrEMBL
      A0A178U9Y1, A0A5S9Y6I2
      Conserved Domains (2) summary
      smart00979
      Location:51 → 86
      TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
      pfam09425
      Location:139 → 163
      CCT_2; Divergent CCT motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C5K8.1

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