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    RALFL4 ralf-like 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839721, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RALFL4
    Official Full Name
    ralf-like 4
    Primary source
    TAIR:AT1G28270
    Locus tag
    AT1G28270
    See related
    Araport:AT1G28270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtRALF4; F3H9.8; F3H9_8; ralf-like 4
    Summary
    Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
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    Genomic context

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    See RALFL4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (9882951..9884189)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Telomerase activating protein Est1 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene VQ motif-containing protein Neighboring gene arabinogalactan protein 31

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis GPI-anchored protein COBL11 is necessary for regulating pollen tube integrity. Li H, et al. Cell Rep, 2023 Nov 28. PMID 38007687
    2. RALF4/19 peptides interact with LRX proteins to control pollen tube growth in Arabidopsis. Mecchia MA, et al. Science, 2017 Dec 22. PMID 29242232
    3. Arabidopsis pollen tube integrity and sperm release are regulated by RALF-mediated signaling. Ge Z, et al. Science, 2017 Dec 22. PMID 29242234, Free PMC Article
    4. Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs. Olsen AN, et al. In Silico Biol, 2002. PMID 12611624
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_102592.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hormone activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium-mediated signaling ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within cell-cell signaling ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of pollen tube growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ralf-like 4
    NP_174148.1
    • ralf-like 4 (RALFL4); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 19 (TAIR:AT2G33775.1); Has 245 Blast hits to 245 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 243; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9882951..9884189
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102592.3 → NP_174148.1  ralf-like 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174148.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FZA0
      UniProtKB/TrEMBL
      A0A178WK76, A0A5S9W8U1, A0A7G2DYK6
      Conserved Domains (1) summary
      pfam05498
      Location:44 → 107
      RALF; Rapid ALkalinization Factor (RALF)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FZA0.1

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