U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ankrd34c ankyrin repeat domain 34C [ Mus musculus (house mouse) ]

    Gene ID: 330998, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Ankrd34cprovided by MGI
    Official Full Name
    ankyrin repeat domain 34Cprovided by MGI
    Primary source
    MGI:MGI:2685617
    See related
    Ensembl:ENSMUSG00000047606 AllianceGenome:MGI:2685617
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm771; B230218L05Rik
    Summary
    Predicted to be active in pi-body. Orthologous to human ANKRD34C (ankyrin repeat domain 34C). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in frontal lobe adult (RPKM 1.8), cortex adult (RPKM 1.2) and 2 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Ankrd34c in Genome Data Viewer
    Location:
    9 E3.1; 9 47.24 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (89605986..89620787, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (89723933..89738735, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene membrane integral NOTCH2 associated receptor 1 Neighboring gene STARR-positive B cell enhancer ABC_E6786 Neighboring gene transmembrane p24 trafficking protein 3 Neighboring gene STARR-positive B cell enhancer mm9_chr9:89684874-89685174 Neighboring gene STARR-seq mESC enhancer starr_24878 Neighboring gene RIKEN cDNA 4930524O08 gene Neighboring gene microRNA 184

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Effects of glucokinase haploinsufficiency on the pancreatic β-cell mass and function of long-term high-fat, high-sucrose diet-fed mice. Shigesawa I, et al. J Diabetes Investig, 2024 Sep 21. PMID 39305123
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    is_active_in pi-body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ankyrin repeat domain-containing protein 34C

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207260.2 → NP_997143.1  ankyrin repeat domain-containing protein 34C

      See identical proteins and their annotated locations for NP_997143.1

      Status: PROVISIONAL

      Source sequence(s)
      AK045652
      Consensus CDS
      CCDS23397.1
      UniProtKB/Swiss-Prot
      Q8BLB8
      UniProtKB/TrEMBL
      B2RPW9
      Related
      ENSMUSP00000140919.2, ENSMUST00000185470.3
      Conserved Domains (2) summary
      COG0666
      Location:34 → 141
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:43 → 82
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      89605986..89620787 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511243.5 → XP_006511306.1  ankyrin repeat domain-containing protein 34C isoform X1

      See identical proteins and their annotated locations for XP_006511306.1

      UniProtKB/Swiss-Prot
      Q8BLB8
      UniProtKB/TrEMBL
      B2RPW9
      Conserved Domains (2) summary
      COG0666
      Location:34 → 141
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:43 → 82
      ANK; ANK repeat [structural motif]

    2. XM_006511242.5 → XP_006511305.1  ankyrin repeat domain-containing protein 34C isoform X1

      See identical proteins and their annotated locations for XP_006511305.1

      UniProtKB/Swiss-Prot
      Q8BLB8
      UniProtKB/TrEMBL
      B2RPW9
      Related
      ENSMUSP00000056787.2, ENSMUST00000060700.4
      Conserved Domains (2) summary
      COG0666
      Location:34 → 141
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:43 → 82
      ANK; ANK repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BLB8.1 GenPept UniProtKB/Swiss-Prot:Q8BLB8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools