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    Y49F6C.8 Mediator of RNA polymerase II transcription subunit 21 [ Caenorhabditis elegans ]

    Gene ID: 190089, updated on 18-Sep-2024

    Summary

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    Official Symbol
    Y49F6C.8
    Official Full Name
    Mediator of RNA polymerase II transcription subunit 21
    Primary source
    WormBase:WBGene00021730
    Locus tag
    CELE_Y49F6C.8
    See related
    AllianceGenome:WB:WBGene00021730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See Y49F6C.8 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003280.10 (3369174..3370111, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene DUF4455 domain-containing protein Neighboring gene Cytosolic protein Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    General protein information

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    Preferred Names
    Mediator of RNA polymerase II transcription subunit 21
    NP_494521.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      3369174..3370111 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062120.2 → NP_494521.1  Mediator of RNA polymerase II transcription subunit 21 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_494521.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9TYJ3
      Conserved Domains (1) summary
      pfam06780
      Location:58 → 157
      Erp_C; Erp protein C-terminus
    Nucleotide Protein
    Heading Accession and Version

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