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    Y48C3A.12 Flocculation protein FLO11;Serine-rich adhesin for platelets [ Caenorhabditis elegans ]

    Gene ID: 190022, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y48C3A.12
    Official Full Name
    Flocculation protein FLO11;Serine-rich adhesin for platelets
    Primary source
    WormBase:WBGene00012994
    Locus tag
    CELE_Y48C3A.12
    See related
    AllianceGenome:WB:WBGene00012994
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in regulation of transcription by RNA polymerase II. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y48C3A.12 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    8
    Sequence:
    Chromosome: II; NC_003280.10 (13376412..13388762)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene tRNA pseudouridine(55) synthase Neighboring gene DNA topoisomerase Neighboring gene Peptidyl-prolyl cis-trans isomerase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A combined binary interaction and phenotypic map of C. elegans cell polarity proteins. Koorman T, et al. Nat Cell Biol, 2016 Mar. PMID 26780296, Free PMC Article
    2. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    3. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Reece-Hoyes JS, et al. Mol Cell, 2013 Jul 11. PMID 23791784, Free PMC Article
    4. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    5. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Flocculation protein FLO11;Serine-rich adhesin for platelets
    NP_001379347.1
    • Confirmed by transcript evidence
    NP_001379348.1
    • Confirmed by transcript evidence
    NP_001379349.1
    • Partially confirmed by transcript evidence
    NP_496820.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      13376412..13388762
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064419.7 → NP_496820.3  Serine-rich adhesin for platelets [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_496820.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U290
      Conserved Domains (2) summary
      pfam01166
      Location:488 → 544
      TSC22; TSC-22/dip/bun family
      pfam15512
      Location:164 → 282
      CAF-1_p60_C; Chromatin assembly factor complex 1 subunit p60, C-terminal

    2. NM_001393221.1 → NP_001379349.1  Flocculation protein FLO11 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7R9SUI8
      Conserved Domains (2) summary
      PHA03247
      Location:170 → 282
      PHA03247; large tegument protein UL36; Provisional
      pfam01166
      Location:490 → 546
      TSC22; TSC-22/dip/bun family

    3. NM_001393222.1 → NP_001379347.1  Flocculation protein FLO11 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7R9XN21
      Conserved Domains (2) summary
      PHA03247
      Location:170 → 282
      PHA03247; large tegument protein UL36; Provisional
      pfam01166
      Location:490 → 546
      TSC22; TSC-22/dip/bun family

    4. NM_001393223.1 → NP_001379348.1  Serine-rich adhesin for platelets [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7R9SV91
      Conserved Domains (2) summary
      PHA03247
      Location:168 → 280
      PHA03247; large tegument protein UL36; Provisional
      pfam01166
      Location:488 → 544
      TSC22; TSC-22/dip/bun family
    Nucleotide Protein
    Heading Accession and Version

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