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    F52E1.2 C-type lectin domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 186111, updated on 2-Nov-2024

    Summary

    Official Symbol
    F52E1.2
    Official Full Name
    C-type lectin domain-containing protein
    Primary source
    WormBase:WBGene00018692
    Locus tag
    CELE_F52E1.2
    See related
    AllianceGenome:WB:WBGene00018692
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable carbohydrate binding activity and pattern recognition receptor activity. Predicted to be involved in immune response. Predicted to be active in external side of plasma membrane. Is expressed in amphid sheath cell and phasmid sheath cell. Human ortholog(s) of this gene implicated in Coronavirus infectious disease; aspergillosis; dengue disease (multiple); human immunodeficiency virus infectious disease (multiple); and tuberculosis (multiple). Orthologous to several human genes including CLEC6A (C-type lectin domain containing 6A); CLEC4A (C-type lectin domain family 4 member A); and CLEC4C (C-type lectin domain family 4 member C). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See F52E1.2 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    4
    Sequence:
    Chromosome: V; NC_003283.11 (8410595..8411831)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Phosphatidylinositol-4,5-bisphosphate 4-phosphatase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene putative V-type proton ATPase subunit H 1 Neighboring gene RNA-binding protein pos-1 Neighboring gene LysM domain-containing protein;Oxidation resistance protein 1 Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables carbohydrate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables pattern recognition receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in external side of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    C-type lectin domain-containing protein
    NP_505170.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      8410595..8411831
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_072769.5NP_505170.2  C-type lectin domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_505170.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q20665
      Conserved Domains (1) summary
      smart00034
      Location:66199
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)