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    Y10G11A.1 5'-nucleotidase [ Caenorhabditis elegans ]

    Gene ID: 178457, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y10G11A.1
    Official Full Name
    5'-nucleotidase
    Primary source
    WormBase:WBGene00012423
    Locus tag
    CELE_Y10G11A.1
    See related
    AllianceGenome:WB:WBGene00012423
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable 5'-nucleotidase activity. Predicted to be involved in nucleotide metabolic process. Predicted to be located in membrane. Predicted to be active in cytoplasm. Orthologous to human NT5C3B (5'-nucleotidase, cytosolic IIIB). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y10G11A.1 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    4
    Sequence:
    Chromosome: IV; NC_003282.8 (16424637..16429895)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene tRNA-His Neighboring gene Envelope glycoprotein UL132;Glycoprotein;Small integral membrane protein 34A Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Dynein light chain

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables 5'-nucleotidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables 5'-nucleotidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables XMP 5'-nucleosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleotide metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    5'-nucleotidase
    NP_001255892.1
    • Confirmed by transcript evidence
    NP_001255893.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      16424637..16429895
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001268963.2 → NP_001255892.1  5'-nucleotidase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255892.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95ZJ9
      Conserved Domains (1) summary
      pfam05822
      Location:47 → 296
      UMPH-1; Pyrimidine 5'-nucleotidase (UMPH-1)

    2. NM_001268964.3 → NP_001255893.1  5'-nucleotidase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255893.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      E4MYG2
      Conserved Domains (1) summary
      cl21460
      Location:1 → 151
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    RNA

    1. NR_131668.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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