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    tag-250 Putative protein tag-250 [ Caenorhabditis elegans ]

    Gene ID: 176113, updated on 9-Dec-2024

    Summary

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    Official Symbol
    tag-250
    Official Full Name
    Putative protein tag-250
    Primary source
    WormBase:WBGene00016203
    Locus tag
    CELE_C29E4.5
    See related
    AllianceGenome:WB:WBGene00016203
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in P granule organization; piRNA processing; and spermatogenesis. Predicted to be active in P granule. Is expressed in hypodermis; intestine; neurons; and pharyngeal muscle cell. Orthologous to human TDRD15 (tudor domain containing 15). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See tag-250 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    14
    Sequence:
    Chromosome: III; NC_003281.10 (7917987..7924921, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Polypeptide N-acetylgalactosaminyltransferase 3 Neighboring gene ncRNA Neighboring gene EF-hand domain-containing protein Neighboring gene Spiroplasma plectrovirus-related protein Neighboring gene C2H2-type domain-containing protein Neighboring gene Nuclear pore complex protein 15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A transcriptional cofactor regulatory network for the C. elegans intestine. Horowitz BB, et al. G3 (Bethesda), 2023 Jul 5. PMID 37119809, Free PMC Article
    2. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in P granule organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in piRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in spermatogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in P granule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Putative protein tag-250
    NP_001021188.2
    • Confirmed by transcript evidence
    NP_001379736.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      7917987..7924921 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001026017.5 → NP_001021188.2  Putative protein tag-250 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001021188.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C8JQN7, P34344, Q4TTD4
      Conserved Domains (2) summary
      smart00333
      Location:222 → 277
      TUDOR; Tudor domain
      pfam00567
      Location:402 → 522
      TUDOR; Tudor domain

    2. NM_001392147.1 → NP_001379736.1  Putative protein tag-250 [Caenorhabditis elegans]

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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