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    col-17 COLlagen [ Caenorhabditis elegans ]

    Gene ID: 173839, updated on 9-Dec-2024

    Summary

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    Official Symbol
    col-17
    Official Full Name
    COLlagen
    Primary source
    WormBase:WBGene00000606
    Locus tag
    CELE_F11G11.10
    See related
    AllianceGenome:WB:WBGene00000606
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See col-17 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003280.10 (4866723..4867574, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Putative thiosulfate sulfurtransferase mpst-4 Neighboring gene DUF4408 domain-containing protein Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The heterochronic gene lin-29 encodes a zinc finger protein that controls a terminal differentiation event in Caenorhabditis elegans. Rougvie AE, et al. Development, 1995 Aug. PMID 7671813
    2. The Caenorhabditis elegans heterochronic gene pathway controls stage-specific transcription of collagen genes. Liu Z, et al. Development, 1995 Aug. PMID 7671811
    3. Stage-specific patterns of collagen gene expression during development of Caenorhabditis elegans. Cox GN, et al. Mol Cell Biol, 1985 Feb. PMID 2983191, Free PMC Article
    4. Loss of an H3K9me anchor rescues laminopathy-linked changes in nuclear organization and muscle function in an Emery-Dreifuss muscular dystrophy model. Harr JC, et al. Genes Dev, 2020 Apr 1. PMID 32139421, Free PMC Article
    5. Analysis of RING finger genes required for embryogenesis in C. elegans. Moore R, et al. Genesis, 2004 Jan. PMID 14755799

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    COLlagen
    NP_494878.3
    • Product from WormBase gene class col;
      Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      4866723..4867574 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062477.9 → NP_494878.3  COLlagen [Caenorhabditis elegans]

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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