U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Fnd3c2 fibronectin type III domain containing 3C2 [ Mus musculus (house mouse) ]

    Gene ID: 331491, updated on 27-Nov-2024

    Summary

    Official Symbol
    Fnd3c2provided by MGI
    Official Full Name
    fibronectin type III domain containing 3C2provided by MGI
    Primary source
    MGI:MGI:2685621
    See related
    Ensembl:ENSMUSG00000073012 AllianceGenome:MGI:2685621
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm775; 5031408O05Rik
    Summary
    Predicted to be involved in spermatid development. Predicted to be active in cytoplasm; intracellular membrane-bounded organelle; and membrane. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward placenta adult (RPKM 15.4) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Fnd3c2 in Genome Data Viewer
    Location:
    X D; X 47.36 cM
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (105278852..105298978, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (106235246..106255372, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1985 Neighboring gene phosphoglycerate kinase 1 Neighboring gene TATA-box binding protein associated factor 9B Neighboring gene fibronectin type III domain containing 3C2 pseudogene Neighboring gene importin 5 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    fibronectin type III domain containing 3C2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033424.3NP_001028596.2  fibronectin type III domain containing 3C2

      Status: VALIDATED

      Source sequence(s)
      AK030291, AK146031
      Consensus CDS
      CCDS30341.1
      UniProtKB/TrEMBL
      A2AP83, Q3UKF7
      Related
      ENSMUSP00000088827.5, ENSMUST00000091282.5
      Conserved Domains (2) summary
      cd00063
      Location:624698
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:141219
      fn3; Fibronectin type III domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      105278852..105298978 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)