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    EMB2785 elongation factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817658, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB2785
    Official Full Name
    elongation factor family protein
    Primary source
    TAIR:AT2G31060
    Locus tag
    AT2G31060
    See related
    Araport:AT2G31060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 2785; T16B12.13; T16B12_13
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    Genomic context

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    See EMB2785 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    18
    Sequence:
    Chromosome: 2; NC_003071.7 (13213100..13218724, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ATP synthase protein I-like protein Neighboring gene oxysterol-binding-like protein Neighboring gene Cupredoxin superfamily protein Neighboring gene TCP domain protein 10 Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001036375.3
    NM_001202718.1
    NM_128661.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    elongation factor family protein
    NP_001031452.1
    • elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT5G13650.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001189647.1
    • elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT5G13650.2).
    NP_180664.2
    • elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT5G13650.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13213100..13218724 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202718.1 → NP_001189647.1  elongation factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189647.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IPW5, Q682V3
      Conserved Domains (5) summary
      cd01891
      Location:59 → 258
      TypA_BipA; Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases
      cd03710
      Location:462 → 542
      BipA_TypA_C; BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly ...
      TIGR01394
      Location:59 → 664
      TypA_BipA; GTP-binding protein TypA/BipA
      cd03691
      Location:266 → 363
      BipA_TypA_II; Domain II of BipA
      cd16263
      Location:370 → 447
      BipA_III; Domain III of GTP-binding protein BipA (TypA)

    2. NM_001036375.3 → NP_001031452.1  elongation factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031452.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPB8, F4IPW4, Q682V3
      Conserved Domains (1) summary
      TIGR01394
      Location:59 → 660
      TypA_BipA; GTP-binding protein TypA/BipA

    3. NM_128661.3 → NP_180664.2  elongation factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180664.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3LF44
      Conserved Domains (4) summary
      cd03710
      Location:318 → 398
      BipA_TypA_C; BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly ...
      cd03691
      Location:122 → 219
      BipA_TypA_II; Domain II of BipA
      cd16263
      Location:226 → 303
      BipA_III; Domain III of GTP-binding protein BipA (TypA)
      cl21455
      Location:1 → 114
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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