U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RPC14 RNApolymerase 14 kDa subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817503, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RPC14
    Official Full Name
    RNApolymerase 14 kDa subunit
    Primary source
    TAIR:AT2G29540
    Locus tag
    AT2G29540
    See related
    Araport:AT2G29540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRPAC14; ATRPC14; F16P2.8; F16P2_8; RNA POLYMERASE 14 KDA SUBUNIT; RNApolymerase 14 kDa subunit
    Summary
    RNA polymerase I(A) and III(C) 14 kDa subunit
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RPC14 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (12642503..12644330)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Inositol phosphorylceramide synthase 3 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Tim10/DDP family zinc finger protein Neighboring gene tubulin beta-7 chain Neighboring gene cytosolic enolase Neighboring gene proliferating cell nuclear antigen 2 Neighboring gene CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A 14-kDa Arabidopsis thaliana RNA polymerase III subunit contains two alpha-motifs flanked by a highly charged C terminus. Larkin RM, et al. Gene, 1996 Jun 26. PMID 8682305
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001036366.2
    NM_001084508.2
    NM_128507.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within tRNA transcription TAS
    Traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    part_of RNA polymerase III complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of RNA polymerase III complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    RNApolymerase 14 kDa subunit
    NP_001031443.1
    • RNApolymerase 14 kDa subunit (RPC14); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: tRNA transcription; LOCATED IN: DNA-directed RNA polymerase III complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site (InterPro:IPR008193), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase, RBP11-like (TAIR:AT3G52090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001077977.1
    • RNApolymerase 14 kDa subunit (RPC14); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: tRNA transcription; LOCATED IN: DNA-directed RNA polymerase III complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); Has 159 Blast hits to 159 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 5; Plants - 54; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
    NP_180514.1
    • RNApolymerase 14 kDa subunit (RPC14); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: tRNA transcription; LOCATED IN: DNA-directed RNA polymerase III complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site (InterPro:IPR008193), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase, RBP11-like (TAIR:AT3G52090.1); Has 889 Blast hits to 889 proteins in 232 species: Archae - 23; Bacteria - 0; Metazoa - 328; Fungi - 301; Plants - 115; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12642503..12644330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036366.2 → NP_001031443.1  RNApolymerase 14 kDa subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031443.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VLX5, Q42483
      Conserved Domains (2) summary
      cd07029
      Location:2 → 85
      RNAP_I_III_AC19; AC19 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III
      pfam01193
      Location:13 → 47
      RNA_pol_L; RNA polymerase Rpb3/Rpb11 dimerization domain

    2. NM_128507.4 → NP_180514.1  RNApolymerase 14 kDa subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180514.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VLX5, Q42483
      Conserved Domains (2) summary
      cd07029
      Location:2 → 85
      RNAP_I_III_AC19; AC19 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III
      pfam01193
      Location:13 → 47
      RNA_pol_L; RNA polymerase Rpb3/Rpb11 dimerization domain

    3. NM_001084508.2 → NP_001077977.1  RNApolymerase 14 kDa subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077977.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRK9
      Conserved Domains (1) summary
      cl11409
      Location:52 → 102
      RNAP_RPB11_RPB3; RPB11 and RPB3 subunits of RNA polymerase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.