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    NIK3 NSP-interacting kinase 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842374, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NIK3
    Official Full Name
    NSP-interacting kinase 3
    Primary source
    TAIR:AT1G60800
    Locus tag
    AT1G60800
    See related
    Araport:AT1G60800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtNIK3; F8A5.31; F8A5_31; NSP-interacting kinase 3
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    Genomic context

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    See NIK3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (22383393..22387766, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cysteine/histidine-rich C1 domain protein Neighboring gene trichome birefringence-like protein (DUF828) Neighboring gene ATP-citrate lyase A-2 Neighboring gene RALF-like 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CIK Receptor Kinases Determine Cell Fate Specification during Early Anther Development in Arabidopsis. Cui Y, et al. Plant Cell, 2018 Oct. PMID 30201822, Free PMC Article
    2. A group of receptor kinases are essential for CLAVATA signalling to maintain stem cell homeostasis. Hu C, et al. Nat Plants, 2018 Apr. PMID 29581511
    3. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001333916.1
    NM_104763.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables coreceptor activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within anther development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within homeostasis of number of meristem cells IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NSP-interacting kinase 3
    NP_176279.1
    • NSP-interacting kinase 3 (NIK3); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NSP-interacting kinase 2 (TAIR:AT3G25560.1); Has 179068 Blast hits to 122128 proteins in 4509 species: Archae - 118; Bacteria - 15693; Metazoa - 45449; Fungi - 8996; Plants - 88569; Viruses - 414; Other Eukaryotes - 19829 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22383393..22387766 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104763.3 → NP_176279.1  NSP-interacting kinase 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176279.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22717, Q93ZS4
      UniProtKB/TrEMBL
      A0A5S9WSM5, A0A654EJS3, A0A7G2E1W0
      Conserved Domains (3) summary
      PLN00113
      Location:13 → 188
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:78 → 99
      LRR_RI; leucine-rich repeat [structural motif]
      cl21453
      Location:307 → 577
      PKc_like; Protein Kinases, catalytic domain

    2. NM_001333916.1 → NP_001322341.1  NSP-interacting kinase 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W553, A0A1P8ATQ8, A0A384LIN7, A0A7G2E1W0
      Conserved Domains (3) summary
      PLN00113
      Location:12 → 147
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:11 → 32
      LRR_RI; leucine-rich repeat [structural motif]
      cl21453
      Location:240 → 510
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93ZS4.1

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