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    CASC3/Barentsz eIF4AIII binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844340, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CASC3/Barentsz eIF4AIII binding protein
    Primary source
    TAIR:AT1G80000
    Locus tag
    AT1G80000
    See related
    Araport:AT1G80000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19K16.3; F19K16_3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (30092807..30097323)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene structural molecules protein Neighboring gene coatomer subunit beta-2 Neighboring gene ncRNA Neighboring gene FAR1-related sequence 8 Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dynamic behavior of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia. Koroleva OA, et al. Plant Cell, 2009 May. PMID 19435936, Free PMC Article
    2. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001334946.1
    NM_001334947.1
    NM_106649.3
    NM_202458.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of exon-exon junction complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CASC3/Barentsz eIF4AIII binding protein
    NP_565226.1
    • CASC3/Barentsz eIF4AIII binding; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G15280.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974187.1
    • CASC3/Barentsz eIF4AIII binding; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G15280.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30092807..30097323
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202458.2 → NP_974187.1  CASC3/Barentsz eIF4AIII binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974187.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93ZJ9, Q9S770
      UniProtKB/TrEMBL
      A0A178WMN8, A0A5S9WVX6
      Conserved Domains (1) summary
      pfam09405
      Location:113 → 189
      Btz; CASC3/Barentsz eIF4AIII binding

    2. NM_106649.3 → NP_565226.1  CASC3/Barentsz eIF4AIII binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565226.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93ZJ9, Q9S770
      UniProtKB/TrEMBL
      A0A178WMN8, A0A5S9WVX6
      Conserved Domains (1) summary
      pfam09405
      Location:113 → 189
      Btz; CASC3/Barentsz eIF4AIII binding

    3. NM_001334946.1 → NP_001322803.1  CASC3/Barentsz eIF4AIII binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93ZJ9, Q9S770
      UniProtKB/TrEMBL
      A0A178WMN8, A0A5S9WVX6
      Conserved Domains (1) summary
      pfam09405
      Location:113 → 189
      Btz; CASC3/Barentsz eIF4AIII binding

    4. NM_001334947.1 → NP_001322802.1  CASC3/Barentsz eIF4AIII binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AV18, A0A5S9WVX6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93ZJ9.1

    Gene LinkOut

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