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    Tudor/PWWP/MBT superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844420, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tudor/PWWP/MBT superfamily protein
    Primary source
    TAIR:AT1G80810
    Locus tag
    AT1G80810
    See related
    Araport:AT1G80810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23A5.16; F23A5_16
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (30364946..30369154)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene XH/XS domain-containing protein Neighboring gene miscRNA Neighboring gene cinnamoyl coa reductase Neighboring gene natural resistance-associated macrophage protein 1 Neighboring gene WRKY DNA-binding protein 40 Neighboring gene DNA glycosylase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Involvement of the Cohesin Cofactor PDS5 (SPO76) During Meiosis and DNA Repair in Arabidopsis thaliana. Pradillo M, et al. Front Plant Sci, 2015. PMID 26648949, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001335011.1
    NM_106729.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in DNA repair IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in homologous recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in mitotic sister chromatid cohesion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tudor/PWWP/MBT superfamily protein
    NP_001319432.1
    • Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 103396 Blast hits to 54411 proteins in 2510 species: Archae - 599; Bacteria - 9234; Metazoa - 41155; Fungi - 13255; Plants - 5790; Viruses - 1058; Other Eukaryotes - 32305 (source: NCBI BLink).
    NP_178196.2
    • Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 103106 Blast hits to 54195 proteins in 2472 species: Archae - 625; Bacteria - 9047; Metazoa - 41139; Fungi - 13239; Plants - 5738; Viruses - 1077; Other Eukaryotes - 32241 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30364946..30369154
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335012.1 → NP_001321712.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8ARR1, A8MRD9, Q9SAI0
      UniProtKB/TrEMBL
      A0A654EQU0
      Conserved Domains (2) summary
      cd20404
      Location:559 → 609
      Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
      cl15079
      Location:31 → 232
      PDS5; Sister chromatid cohesion protein PDS5

    2. NM_001335013.1 → NP_001321713.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EQU0

    3. NM_001335014.1 → NP_001321711.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ART9

    4. NM_001335011.1 → NP_001319432.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EQU0

    5. NM_106729.2 → NP_178196.2  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178196.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EQU0, B3H4B3
    Nucleotide Protein
    Heading Accession and Version

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