ATAN11 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: ATAN11
Official Full Name: Transducin/WD40 repeat-like superfamily protein
Primary source: TAIR:AT1G12910
Locus tag: AT1G12910
See related: Araport:AT1G12910
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ANTHOCYANIN11; F13K23.16; F13K23_16; LIGHT-REGULATED WD 1; LWD1
Summary: Encodes LIGHT-REGULATED WD1 (LWD1), a clock proteins regulating circadian period length and photoperiodic flowering.
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Genomic context

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See ATAN11 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 1

Sequence:: Chromosome: 1; NC_003070.9 (4394897..4396291, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Data show that binding of LWD1 and TEOSINTE BRANCHED 1-CYCLOIDEA-PCF20 (TCP20) and TCP22 to the TCP-binding site in the CIRCADIAN CLOCK ASSOCIATED1 (CCA1) promoter activates CCA1.
Title: LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
LWD1/2 controls the amplitude and period length but not the robustness of the Arabidopsis circadian rhythm under continuous light.
Title: LIGHT-REGULATED WD1 and PSEUDO-RESPONSE REGULATOR9 form a positive feedback regulatory loop in the Arabidopsis circadian clock.
LWD1 and LWD2 are WD-containing clock proteins that regulate photoperiodic flowering. [LWD1]
Title: Two new clock proteins, LWD1 and LWD2, regulate Arabidopsis photoperiodic flowering.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

At-9GBJ-073 (e-PCR)
- UniSTS:229457

Homology

Orthologs from OrthoDB

NM_101162.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables transcription cis-regulatory region binding	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within anthocyanin-containing compound biosynthetic process	NAS Non-traceable Author Statement more info	PubMed
acts_upstream_of_or_within entrainment of circadian clock by photoperiod	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within photoperiodism, flowering	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	ISM Inferred from Sequence Model more info
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: Transducin/WD40 repeat-like superfamily protein

NP_172751.1

ANTHOCYANIN11 (ATAN11); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G26640.1); Has 4731 Blast hits to 4446 proteins in 351 species: Archae - 6; Bacteria - 291; Metazoa - 1848; Fungi - 1200; Plants - 767; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

4394897..4396291 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_101162.3 → NP_172751.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_172751.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O24513, Q8LAQ5, Q9LPV9

UniProtKB/TrEMBL

A0A178W0A8, A0A5S9U3D3

Conserved Domains (2) summary

sd00039
Location:139 → 175

7WD40; WD40 repeat [structural motif]

cl29593
Location:136 → 300

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...