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    vacuolar sorting-associated protein (DUF946) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819590, updated on 18-Sep-2024

    Summary

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    Official Full Name
    vacuolar sorting-associated protein (DUF946)
    Primary source
    TAIR:AT3G04350
    Locus tag
    AT3G04350
    See related
    Araport:AT3G04350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6K12.3; T6K12_3
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (1153723..1156876, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Kunitz family trypsin and protease inhibitor protein Neighboring gene FtsH extracellular protease family Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene plasmodesmata-located protein 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001337513.1
    NM_111306.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    vacuolar sorting-associated protein (DUF946)
    NP_566224.1
    • Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT5G18490.1); Has 389 Blast hits to 369 proteins in 101 species: Archae - 0; Bacteria - 21; Metazoa - 15; Fungi - 143; Plants - 203; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1153723..1156876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111306.4 → NP_566224.1  vacuolar sorting-associated protein (DUF946) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566224.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V684, A0A654F431, A0A7G2EI10, Q9M8Z1
      Conserved Domains (1) summary
      pfam06101
      Location:23 → 565
      Vps62; Vacuolar protein sorting-associated protein 62

    2. NM_001337513.1 → NP_001327779.1  vacuolar sorting-associated protein (DUF946) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V684, A0A1I9LTD2, A0A7G2EI10
    Nucleotide Protein
    Heading Accession and Version

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