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    ckl10 casein kinase I-like 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821915, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ckl10
    Official Full Name
    casein kinase I-like 10
    Primary source
    TAIR:AT3G23340
    Locus tag
    AT3G23340
    See related
    Araport:AT3G23340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    casein kinase I-like 10
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    Genomic context

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    See ckl10 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Sequence:
    Chromosome: 3; NC_003074.8 (8350803..8354021)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Splicing factor 3B subunit 5/RDS3 complex subunit 10 Neighboring gene ncRNA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ENTH/VHS family protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plasmodesmal-associated protein kinase in tobacco and Arabidopsis recognizes a subset of non-cell-autonomous proteins. Lee JY, et al. Plant Cell, 2005 Oct. PMID 16126836, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001338625.1
    NM_113237.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    casein kinase I-like 10
    NP_188976.1
    • casein kinase I-like 10 (ckl10); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I (TAIR:AT4G14340.1); Has 56550 Blast hits to 56234 proteins in 2232 species: Archae - 39; Bacteria - 9117; Metazoa - 21673; Fungi - 6267; Plants - 8804; Viruses - 331; Other Eukaryotes - 10319 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8350803..8354021
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113237.3 → NP_188976.1  casein kinase I-like 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188976.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39051, Q9LW62
      UniProtKB/TrEMBL
      A0A178VJF4, A0A178VL59, A0A5S9XEX5
      Conserved Domains (1) summary
      cd14125
      Location:8 → 282
      STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

    2. NM_001338625.1 → NP_001326886.1  casein kinase I-like 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJF4, A0A1I9LQM5
      Conserved Domains (1) summary
      cd14125
      Location:7 → 268
      STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LW62.1

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