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    PHS1 Glycosyl transferase, family 35 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822590, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PHS1
    Official Full Name
    Glycosyl transferase, family 35
    Primary source
    TAIR:AT3G29320
    Locus tag
    AT3G29320
    See related
    Araport:AT3G29320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    alpha-glucan phosphorylase 1; ATPHS1; MUO10.17
    Summary
    Encodes a plastidic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose.
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    Genomic context

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    See PHS1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Sequence:
    Chromosome: 3; NC_003074.8 (11252807..11257814)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene calmodulin-binding protein-like protein Neighboring gene zinc finger RNA-binding-like protein Neighboring gene zinc finger (C2H2 type) family protein Neighboring gene histidine-containing phosphotransmitter 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Carbon partitioning and export in transgenic Arabidopsis thaliana with altered capacity for sucrose synthesis grown at low temperature: a role for metabolite transporters. Lundmark M, et al. Plant Cell Environ, 2006 Sep. PMID 16913860
    2. Plastidial alpha-glucan phosphorylase is not required for starch degradation in Arabidopsis leaves but has a role in the tolerance of abiotic stress. Zeeman SC, et al. Plant Physiol, 2004 Jun. PMID 15173560, Free PMC Article
    3. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
    4. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701
    5. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_113857.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 1,4-alpha-oligoglucan phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables 1,4-alpha-oligoglucan phosphorylase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables glycogen phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to temperature stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in cytosol HDA PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in plastid TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Glycosyl transferase, family 35
    NP_189578.1
    • Glycosyl transferase, family 35; FUNCTIONS IN: phosphorylase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to water deprivation, response to temperature stimulus; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch/alpha-glucan phosphorylase (InterPro:IPR011833), Glycosyl transferase, family 35 (InterPro:IPR000811); BEST Arabidopsis thaliana protein match is: alpha-glucan phosphorylase 2 (TAIR:AT3G46970.1); Has 6408 Blast hits to 5779 proteins in 1768 species: Archae - 99; Bacteria - 4542; Metazoa - 558; Fungi - 166; Plants - 202; Viruses - 2; Other Eukaryotes - 839 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      11252807..11257814
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113857.3 → NP_189578.1  Glycosyl transferase, family 35 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189578.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LIB2
      UniProtKB/TrEMBL
      A0A654FGW8, W8PUS4
      Conserved Domains (2) summary
      cd04300
      Location:97 → 956
      GT1_Glycogen_Phosphorylase; This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of ...
      TIGR02093
      Location:100 → 956
      P_ylase; glycogen/starch/alpha-glucan phosphorylases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LIB2.1

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