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    NHL domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820715, updated on 18-Sep-2024

    Summary

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    Official Full Name
    NHL domain-containing protein
    Primary source
    TAIR:AT3G14860
    Locus tag
    AT3G14860
    See related
    Araport:AT3G14860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (4998304..5001046, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene TRICHOME BIREFRINGENCE-LIKE 41 Neighboring gene tRNA-Cys Neighboring gene hypothetical protein (DUF641) Neighboring gene transcription factor-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_112348.4
    NM_202586.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NHL domain-containing protein
    NP_188104.2
    • NHL domain-containing protein; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G70280.2); Has 2752 Blast hits to 1249 proteins in 210 species: Archae - 76; Bacteria - 1297; Metazoa - 50; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 1116 (source: NCBI BLink).
    NP_974315.1
    • NHL domain-containing protein; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G70280.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4998304..5001046 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202586.3 → NP_974315.1  NHL domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974315.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VB72, A0A384KRY3, A0A5S9XC68, A0A654F8X3, F4IXC9
      Conserved Domains (2) summary
      cd05819
      Location:92 → 134
      NHL; NHL repeat [structural motif]
      cl18310
      Location:92 → 232
      NHL; NHL repeat unit of beta-propeller proteins

    2. NM_112348.4 → NP_188104.2  NHL domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188104.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V943, A0A384L8N7, A0A7G2EI94, Q8RWI7
      Conserved Domains (2) summary
      cd05819
      Location:92 → 134
      NHL; NHL repeat [structural motif]
      cl18310
      Location:92 → 232
      NHL; NHL repeat unit of beta-propeller proteins
    Nucleotide Protein
    Heading Accession and Version

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