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    zinc finger CCCH domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838819, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc finger CCCH domain protein
    Primary source
    TAIR:AT1G22140
    Locus tag
    AT1G22140
    See related
    Araport:AT1G22140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2E2.21; F2E2_21
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (7814663..7815722, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene AGAMOUS-like 104 Neighboring gene ncRNA Neighboring gene sulfate transporter 1;3 Neighboring gene senescence-associated family protein (DUF581)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001332537.1
    NM_102064.5
    NM_202152.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger CCCH domain protein
    NP_564158.1
    • unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_973881.2
    • unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7814663..7815722 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102064.5 → NP_564158.1  zinc finger CCCH domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564158.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WNR4, A0A384L206, Q93Z58
      Conserved Domains (1) summary
      pfam16543
      Location:11 → 69
      DFRP_C; DRG Family Regulatory Proteins, Tma46

    2. NM_001332537.1 → NP_001322669.1  zinc finger CCCH domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WNR4, A0A384L206, Q93Z58
      Conserved Domains (1) summary
      pfam16543
      Location:11 → 69
      DFRP_C; DRG Family Regulatory Proteins, Tma46

    3. NM_202152.2 → NP_973881.2  zinc finger CCCH domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973881.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MR19
    Nucleotide Protein
    Heading Accession and Version

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