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    Ypt/Rab-GAP domain of gyp1p superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829118, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    Primary source
    TAIR:AT4G29950
    Locus tag
    AT4G29950
    See related
    Araport:AT4G29950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (14656954..14660573)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene pathogenesis related homeodomain protein A Neighboring gene uncharacterized protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene fasciclin-like arabinogalactan protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_001341986.1
    NM_119141.5
    NM_202909.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    NP_567836.2
    • Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G19240.1); Has 1856 Blast hits to 1473 proteins in 235 species: Archae - 2; Bacteria - 59; Metazoa - 791; Fungi - 326; Plants - 250; Viruses - 6; Other Eukaryotes - 422 (source: NCBI BLink).
    NP_974638.1
    • Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G19240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14656954..14660573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119141.5 → NP_567836.2  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567836.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XZB5, Q9SZR5
      Conserved Domains (1) summary
      cl02495
      Location:101 → 353
      RabGAP-TBC; Rab-GTPase-TBC domain

    2. NM_001341986.1 → NP_001329144.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B6U2, A0A5S9XZB5

    3. NM_202909.1 → NP_974638.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974638.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JPG6, Q9XHE5
      Conserved Domains (1) summary
      smart00164
      Location:1 → 228
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    Nucleotide Protein
    Heading Accession and Version

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