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    IRX15 IRREGULAR XYLEM protein (DUF579) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824184, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IRX15
    Official Full Name
    IRREGULAR XYLEM protein (DUF579)
    Primary source
    TAIR:AT3G50220
    Locus tag
    AT3G50220
    See related
    Araport:AT3G50220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    IRREGULAR XYLEM 15
    Summary
    Encode a DUF579 (domain of unknown function 579) containing protein essential for normal xylan synthesis and deposition in the secondary cell wall.
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    Genomic context

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    See IRX15 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (18617424..18618816, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF247) Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ATP binding microtubule motor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The DUF579 domain containing proteins IRX15 and IRX15-L affect xylan synthesis in Arabidopsis. Jensen JK, et al. Plant J, 2011 May. PMID 21288268
    2. Arabidopsis genes IRREGULAR XYLEM (IRX15) and IRX15L encode DUF579-containing proteins that are essential for normal xylan deposition in the secondary cell wall. Brown D, et al. Plant J, 2011 May. PMID 21251108
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. IRX15 and IRX15-L function in a redundant manner and are involved in xylan biosynthesis.
      Title: The DUF579 domain containing proteins IRX15 and IRX15-L affect xylan synthesis in Arabidopsis.
    2. IRK15 and IRK15L are members of the DUF579 gene family essential for normal xylan deposition during secondary cell wall deposition.
      Title: Arabidopsis genes IRREGULAR XYLEM (IRX15) and IRX15L encode DUF579-containing proteins that are essential for normal xylan deposition in the secondary cell wall.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_114882.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within plant-type secondary cell wall biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within xylan biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    IRREGULAR XYLEM protein (DUF579)
    NP_190591.1
    • Protein of unknown function (DUF579); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT5G67210.1); Has 252 Blast hits to 252 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18617424..18618816 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114882.2 → NP_190591.1  IRREGULAR XYLEM protein (DUF579) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190591.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MF18, Q56WV6, Q8LB40, Q9SNE5
      UniProtKB/TrEMBL
      A0A178VCZ5
      Conserved Domains (1) summary
      TIGR01627
      Location:82 → 310
      A_thal_3515; uncharacterized plant-specific domain TIGR01627
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SNE5.1

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