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    P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835285, updated on 18-Sep-2024

    Summary

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    Official Full Name
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Primary source
    TAIR:AT5G52090
    Locus tag
    AT5G52090
    See related
    Araport:AT5G52090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSG15.19; MSG15_19
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (21167432..21169462, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Agenet domain-containing protein Neighboring gene ncRNA Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene ncRNA Neighboring gene Dihydrodipicolinate reductase, bacterial/plant Neighboring gene chaperone (DUF2930) Neighboring gene ribonuclease H superfamily polynucleotidyl transferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    NP_200022.1
    • P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G37150.1); Has 5935 Blast hits to 5127 proteins in 958 species: Archae - 175; Bacteria - 1607; Metazoa - 1353; Fungi - 1209; Plants - 654; Viruses - 57; Other Eukaryotes - 880 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21167432..21169462 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124588.1 → NP_200022.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200022.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UI23, Q9FJ83
      Conserved Domains (4) summary
      COG1112
      Location:324 → 616
      DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
      cd00046
      Location:83 → 165
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam13086
      Location:57 → 408
      AAA_11; AAA domain
      pfam13087
      Location:415 → 612
      AAA_12; AAA domain
    Nucleotide Protein
    Heading Accession and Version

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