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    TRAF-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834376, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TRAF-like superfamily protein
    Primary source
    TAIR:AT5G43560
    Locus tag
    AT5G43560
    See related
    Araport:AT5G43560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K9D7.6; K9D7_6
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (17500376..17505713)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene C2H2 and C2HC zinc fingers superfamily protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene Serine protease inhibitor, potato inhibitor I-type family protein Neighboring gene Serine protease inhibitor, potato inhibitor I-type family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant TRAF Proteins Regulate NLR Immune Receptor Turnover. Huang S, et al. Cell Host Microbe, 2016 Feb 10. PMID 26867179
    2. TRAF Family Proteins Regulate Autophagy Dynamics by Modulating AUTOPHAGY PROTEIN6 Stability in Arabidopsis. Qi H, et al. Plant Cell, 2017 Apr. PMID 28351989, Free PMC Article
    3. Detection of in vivo interactions between Arabidopsis class A-HSFs, using a novel BiFC fragment, and identification of novel class B-HSF interacting proteins. Li M, et al. Eur J Cell Biol, 2010 Feb-Mar. PMID 19945192
    4. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_123722.5
    NM_180794.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein histidine kinase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within autophagosome organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within innate immune response IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with autophagosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRAF-like superfamily protein
    NP_199169.1
    • TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT1G04300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_851125.1
    • TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT1G04300.1); Has 12918 Blast hits to 9295 proteins in 852 species: Archae - 42; Bacteria - 1359; Metazoa - 4426; Fungi - 1772; Plants - 1152; Viruses - 72; Other Eukaryotes - 4095 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17500376..17505713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123722.5 → NP_199169.1  TRAF-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199169.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DG57, Q0WV70, Q8RY18, Q9FIY4
      UniProtKB/TrEMBL
      A0A7G2FGF0
      Conserved Domains (1) summary
      cd00121
      Location:69 → 192
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

    2. NM_180794.5 → NP_851125.1  TRAF-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851125.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DG57, Q0WV70, Q8RY18, Q9FIY4
      UniProtKB/TrEMBL
      A0A7G2FGF0
      Conserved Domains (1) summary
      cd00121
      Location:69 → 192
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RY18.1

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