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    Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834592, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein
    Primary source
    TAIR:AT5G45560
    Locus tag
    AT5G45560
    See related
    Araport:AT5G45560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MFC19.23; MFC19_23
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    21
    Sequence:
    Chromosome: 5; NC_003076.8 (18465283..18470944)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF594) Neighboring gene Mob1/phocein family protein Neighboring gene Ulp1 protease family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123924.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein
    NP_199369.2
    • Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein; FUNCTIONS IN: lipid binding; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ENHANCED DISEASE RESISTANCE 2 (TAIR:AT4G19040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18465283..18470944
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344631.1 → NP_001332734.1  Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UA77, A0A1P8BHW3, A0A5S9YBH5

    2. NM_123924.3 → NP_199369.2  Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199369.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZF6, Q9FH45
      UniProtKB/TrEMBL
      A0A178UA77, A0A5S9YBH5
      Conserved Domains (4) summary
      cd00177
      Location:192 → 368
      START; Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins
      smart00233
      Location:4 → 110
      PH; Pleckstrin homology domain
      PLN00188
      Location:1 → 719
      PLN00188; enhanced disease resistance protein (EDR2); Provisional
      pfam07059
      Location:503 → 706
      DUF1336; Protein of unknown function (DUF1336)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VZF6.1

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