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    HIR1 SPFH/Band 7/PHB domain-containing membrane-associated protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836395, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HIR1
    Official Full Name
    SPFH/Band 7/PHB domain-containing membrane-associated protein family
    Primary source
    TAIR:AT5G62740
    Locus tag
    AT5G62740
    See related
    Araport:AT5G62740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATHIR1; AtHIR4; HIR4; hypersensitive induced reaction 4; HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1; MQB2.40; MQB2_40
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    Genomic context

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    See HIR1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (25200838..25202839)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Integral membrane HPP family protein Neighboring gene Major facilitator superfamily protein Neighboring gene uncharacterized protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rice hypersensitive induced reaction protein 1 (OsHIR1) associates with plasma membrane and triggers hypersensitive cell death. Zhou L, et al. BMC Plant Biol, 2010 Dec 30. PMID 21192820, Free PMC Article
    2. Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2004 Jul. PMID 15060130
    3. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    4. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    5. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_125669.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein histidine kinase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    SPFH/Band 7/PHB domain-containing membrane-associated protein family
    NP_201080.1
    • HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1 (HIR1); INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT1G69840.7); Has 5648 Blast hits to 5647 proteins in 1784 species: Archae - 171; Bacteria - 3783; Metazoa - 267; Fungi - 306; Plants - 270; Viruses - 3; Other Eukaryotes - 848 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25200838..25202839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125669.3 → NP_201080.1  SPFH/Band 7/PHB domain-containing membrane-associated protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201080.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FM19
      UniProtKB/TrEMBL
      A0A178U8N7, A0A5S9YIP0, A0A7G2FPI7
      Conserved Domains (1) summary
      cd03407
      Location:10 → 278
      SPFH_like_u4; Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FM19.1

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