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    MSL9 mechanosensitive channel of small conductance-like 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832072, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MSL9
    Official Full Name
    mechanosensitive channel of small conductance-like 9
    Primary source
    TAIR:AT5G19520
    Locus tag
    AT5G19520
    See related
    Araport:AT5G19520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATMSL9; mechanosensitive channel of small conductance-like 9; T20D1.40; T20D1_40
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    Genomic context

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    See MSL9 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (6585355..6588966)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene transferases/nucleotidyltransferase Neighboring gene Histone superfamily protein Neighboring gene Tryptophan/tyrosine permease Neighboring gene Translation elongation factor EF1B/ribosomal protein S6 family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene thermosome subunit gamma Neighboring gene aspartate aminotransferase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two MscS homologs provide mechanosensitive channel activities in the Arabidopsis root. Haswell ES, et al. Curr Biol, 2008 May 20. PMID 18485707
    2. Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action. Wang P, et al. Proc Natl Acad Sci U S A, 2013 Jul 2. PMID 23776212, Free PMC Article
    3. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MSL9 and MSL10 are required for mechanosensitive channel activities detected in protoplasts derived from root cells [MSL9]
      Title: Two MscS homologs provide mechanosensitive channel activities in the Arabidopsis root.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001343609.1
    NM_121957.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mechanosensitive monoatomic ion channel activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within detection of mechanical stimulus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mechanosensitive channel of small conductance-like 9
    NP_197453.1
    • mechanosensitive channel of small conductance-like 9 (MSL9); CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 10 (TAIR:AT5G12080.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6585355..6588966
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121957.4 → NP_197453.1  mechanosensitive channel of small conductance-like 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197453.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84M97
      UniProtKB/TrEMBL
      A0A654G2J2, A0A7G2F906
      Conserved Domains (1) summary
      cl39057
      Location:528 → 728
      MS_channel; Mechanosensitive ion channel

    2. NM_001343609.1 → NP_001331595.1  mechanosensitive channel of small conductance-like 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84M97
      UniProtKB/TrEMBL
      A0A654G2J2, A0A7G2F906
      Conserved Domains (1) summary
      cl39057
      Location:528 → 728
      MS_channel; Mechanosensitive ion channel
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84M97.1

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