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    hAT transposon superfamily [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827161, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hAT transposon superfamily
    Primary source
    TAIR:AT4G15020
    Locus tag
    AT4G15020
    See related
    Araport:AT4G15020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3551W; FCAALL.174
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (8575342..8578729)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ribosomal L27e protein family Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene uncharacterized protein Neighboring gene folate-sensitive fragile site protein Neighboring gene Subtilisin-like serine endopeptidase family protein Neighboring gene NEP-interacting protein, putative (DUF239)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001160762.2
    NM_117589.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hAT transposon superfamily
    NP_001154234.1
    • hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 879 Blast hits to 805 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
    NP_193238.5
    • hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 879 Blast hits to 805 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8575342..8578729
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160762.2 → NP_001154234.1  hAT transposon superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154234.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FPH2, F4JJC1, Q8L717
      Conserved Domains (3) summary
      pfam04937
      Location:234 → 385
      DUF659; Protein of unknown function (DUF 659)
      pfam05699
      Location:583 → 672
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      cl02703
      Location:16 → 54
      zf-BED; BED zinc finger

    2. NM_117589.6 → NP_193238.5  hAT transposon superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193238.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FPH2, F4JJC1, Q8L717
      Conserved Domains (3) summary
      pfam04937
      Location:234 → 385
      DUF659; Protein of unknown function (DUF 659)
      pfam05699
      Location:583 → 672
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      cl02703
      Location:16 → 54
      zf-BED; BED zinc finger
    Nucleotide Protein
    Heading Accession and Version

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