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    sks16 SKU5 similar 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816895, updated on 18-Sep-2024

    Summary

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    Official Symbol
    sks16
    Official Full Name
    SKU5 similar 16
    Primary source
    TAIR:AT2G23630
    Locus tag
    AT2G23630
    See related
    Araport:AT2G23630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F26B6.30; SKU5 similar 16; SKU5 similar 16
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    Genomic context

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    See sks16 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (10052365..10055427, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene methyl esterase 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Reticulan like protein B13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel approach to dissect the abscission process in Arabidopsis. González-Carranza ZH, et al. Plant Physiol, 2012 Nov. PMID 22992509, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within floral organ abscission IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SKU5 similar 16
    NP_565554.1
    • SKU5 similar 16 (sks16); FUNCTIONS IN: pectinesterase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 15 (TAIR:AT4G37160.1); Has 5309 Blast hits to 5276 proteins in 999 species: Archae - 6; Bacteria - 1673; Metazoa - 270; Fungi - 1945; Plants - 1254; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10052365..10055427 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335859.1 → NP_001324736.1  SKU5 similar 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B128, A0A5S9X0S9

    2. NM_127927.3 → NP_565554.1  SKU5 similar 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565554.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VP95, A0A5S9X0S9, O64838
      Conserved Domains (1) summary
      PLN02835
      Location:17 → 538
      PLN02835; oxidoreductase
    Nucleotide Protein
    Heading Accession and Version

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