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    JAL22 jacalin-related lectin 22 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818516, updated on 18-Sep-2024

    Summary

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    Official Symbol
    JAL22
    Official Full Name
    jacalin-related lectin 22
    Primary source
    TAIR:AT2G39310
    Locus tag
    AT2G39310
    See related
    Araport:AT2G39310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    jacalin-related lectin 22; T16B24.5; T16B24_5
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    Genomic context

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    See JAL22 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (16414034..16416845, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene phosphatidylglycerolphosphate synthase 1 Neighboring gene CAP-gly domain linker Neighboring gene Cysteine proteinases superfamily protein Neighboring gene jacalin-related lectin 23

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Post-transcriptional control of GRF transcription factors by microRNA miR396 and GIF co-activator affects leaf size and longevity. Debernardi JM, et al. Plant J, 2014 Aug. PMID 24888433
    2. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article
    3. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084552.1
    NM_001161092.1
    NM_001336765.1
    NM_129488.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    jacalin-related lectin 22
    NP_001078021.1
    • jacalin-related lectin 22 (JAL22); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin-related lectin 23 (TAIR:AT2G39330.1); Has 1806 Blast hits to 711 proteins in 43 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 3; Plants - 1785; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
    NP_001154564.1
    • jacalin-related lectin 22; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.12 twelve leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin-related lectin 23 (TAIR:AT2G39330.1); Has 2014 Blast hits to 748 proteins in 43 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 5; Plants - 1992; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
    NP_181463.1
    • jacalin-related lectin 22 (JAL22); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin-related lectin 23 (TAIR:AT2G39330.1); Has 2014 Blast hits to 748 proteins in 43 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 5; Plants - 1992; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16414034..16416845 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129488.4 → NP_181463.1  jacalin-related lectin 22 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181463.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MR44, O80950
      UniProtKB/TrEMBL
      A0A5S9X5D0, A0A654F1K0
      Conserved Domains (1) summary
      pfam01419
      Location:322 → 453
      Jacalin; Jacalin-like lectin domain

    2. NM_001336765.1 → NP_001323620.1  jacalin-related lectin 22 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MR44, O80950
      UniProtKB/TrEMBL
      A0A5S9X5D0, A0A654F1K0
      Conserved Domains (1) summary
      pfam01419
      Location:322 → 453
      Jacalin; Jacalin-like lectin domain

    3. NM_001084552.1 → NP_001078021.1  jacalin-related lectin 22 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078021.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X5D0
      Conserved Domains (1) summary
      pfam01419
      Location:292 → 423
      Jacalin; Jacalin-like lectin domain

    4. NM_001161092.1 → NP_001154564.1  jacalin-related lectin 22 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154564.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MR44, O80950
      UniProtKB/TrEMBL
      A0A5S9X5D0, A0A654F1K0
      Conserved Domains (1) summary
      pfam01419
      Location:322 → 453
      Jacalin; Jacalin-like lectin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80950.1

    Gene LinkOut

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