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    U-box domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819200, updated on 18-Sep-2024

    Summary

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    Official Full Name
    U-box domain-containing protein
    Primary source
    TAIR:AT2G45920
    Locus tag
    AT2G45920
    See related
    Araport:AT2G45920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4I18.10
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (18898629..18901326)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein Neighboring gene U-box domain-containing protein kinase family protein Neighboring gene uncharacterized protein Neighboring gene hypothetical protein (DUF295) Neighboring gene ncRNA Neighboring gene SKP1-like 20

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001337161.1
    NM_130155.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    U-box domain-containing protein
    NP_182116.2
    • U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G61390.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18898629..18901326
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130155.5 → NP_182116.2  U-box domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182116.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80827, Q683D5
      UniProtKB/TrEMBL
      A0A178VT18, A0A5S9X7L8
      Conserved Domains (3) summary
      smart00504
      Location:328 → 391
      Ubox; Modified RING finger domain
      cd01989
      Location:15 → 144
      STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
      cl02050
      Location:213 → 306
      Ribosomal_S25; S25 ribosomal protein

    2. NM_001337161.1 → NP_001324262.1  U-box domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VT18, A0A1P8AZL8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q683D5.1

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