U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: U11/U12 small nuclear ribonucleoprotein
Primary source: TAIR:AT2G46200
Locus tag: AT2G46200
See related: Araport:AT2G46200
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T3F17.15
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 9

Sequence:: Chromosome: 2; NC_003071.7 (18974367..18979061, complement)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

these results reveal that U11/U12-65K is an indispensible component of the minor spliceosome complex by binding to both U11/U12-59K and U12 snRNA, and that multiple interactions among the U11/U12-snRNP proteins are necessary for minor spliceosome assembly.
Title: Structural features important for the U12 snRNA binding and minor spliceosome assembly of Arabidopsis U11/U12-small nuclear ribonucleoproteins.

Submit: New GeneRIF Correction

General gene information

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Homology

Orthologs from OrthoDB

NM_001337179.1

Supported by ESTs:

NM_001337180.1

Supported by ESTs:

NM_180117.2

Supported by ESTs:

NM_201967.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in cytoplasm	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: U11/U12 small nuclear ribonucleoprotein

NP_850448.1

unknown protein; Has 2968 Blast hits to 2381 proteins in 310 species: Archae - 16; Bacteria - 188; Metazoa - 1070; Fungi - 227; Plants - 145; Viruses - 4; Other Eukaryotes - 1318 (source: NCBI BLink).

NP_973696.1

unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

18974367..18979061 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_180117.2 → NP_850448.1 U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_850448.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O82349, Q8VYD3

UniProtKB/TrEMBL

A0A178VUN7, A0A5S9X7E5

Conserved Domains (1) summary

pfam16021
Location:141 → 373

PDCD7; Programmed cell death protein 7
NM_001337179.1 → NP_001324669.1 U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VUN7, A0A1P8B0Q9
NM_201967.2 → NP_973696.1 U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_973696.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O82349, Q8VYD3

UniProtKB/TrEMBL

A0A178VUN7, A0A5S9X7E5

Conserved Domains (1) summary

pfam16021
Location:141 → 373

PDCD7; Programmed cell death protein 7
NM_001337180.1 → NP_001324668.1 U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VUN7, A0A1P8B0V2