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    transmembrane protein (DUF788) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816926, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein (DUF788)
    Primary source
    TAIR:AT2G23940
    Locus tag
    AT2G23940
    See related
    Araport:AT2G23940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T29E15.14; T29E15_14
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (10183867..10185331)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene Putative small nuclear ribonucleoprotein G Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene ncRNA Neighboring gene Leucine-rich repeat protein kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001335874.1
    NM_001335875.1
    NM_127955.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    transmembrane protein (DUF788)
    NP_565558.1
    • Protein of unknown function (DUF788); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF788 (InterPro:IPR008506); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF788) (TAIR:AT4G30500.1); Has 311 Blast hits to 311 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 102; Plants - 52; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10183867..10185331
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127955.4 → NP_565558.1  transmembrane protein (DUF788) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565558.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0R4, A0A5S9X0K8, O82222, Q8GYK4, Q8LEX3
      Conserved Domains (1) summary
      pfam05620
      Location:1 → 163
      DUF788; Protein of unknown function (DUF788)

    2. NM_001335874.1 → NP_001324055.1  transmembrane protein (DUF788) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0R4, A0A5S9X0K8, O82222, Q8GYK4, Q8LEX3
      Conserved Domains (1) summary
      pfam05620
      Location:1 → 163
      DUF788; Protein of unknown function (DUF788)

    3. NM_001335875.1 → NP_001324054.1  transmembrane protein (DUF788) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0R4, A0A5S9X0K8, O82222, Q8GYK4, Q8LEX3
      Conserved Domains (1) summary
      pfam05620
      Location:1 → 163
      DUF788; Protein of unknown function (DUF788)
    Nucleotide Protein
    Heading Accession and Version

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