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    PRP38 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818660, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PRP38 family protein
    Primary source
    TAIR:AT2G40650
    Locus tag
    AT2G40650
    See related
    Araport:AT2G40650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7D17.17; T7D17_17
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (16963286..16965798, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene Uncharacterized conserved protein (UCP030365) Neighboring gene RING/U-box superfamily protein Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene response regulator 16

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant-specific SR-related protein atSR45a interacts with spliceosomal proteins in plant nucleus. Tanabe N, et al. Plant Mol Biol, 2009 Jun. PMID 19238562
    2. Role of the ubiquitin-like protein Hub1 in splice-site usage and alternative splicing. Mishra SK, et al. Nature, 2011 May 25. PMID 21614000, Free PMC Article
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_129627.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PRP38 family protein
    NP_565937.1
    • PRP38 family protein; CONTAINS InterPro DOMAIN/s: PRP38 (InterPro:IPR005037); BEST Arabidopsis thaliana protein match is: SART-1 family (TAIR:AT5G16780.1); Has 71927 Blast hits to 24591 proteins in 1125 species: Archae - 74; Bacteria - 21911; Metazoa - 26638; Fungi - 6334; Plants - 3978; Viruses - 317; Other Eukaryotes - 12675 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16963286..16965798 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129627.3 → NP_565937.1  PRP38 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565937.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQD7, Q8LB54
      UniProtKB/TrEMBL
      A0A178VVG9, A0A5S9X5T8
      Conserved Domains (1) summary
      pfam03371
      Location:10 → 172
      PRP38; PRP38 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LB54.1

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