kinase family with ARM repeat domain-containing protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: kinase family with ARM repeat domain-containing protein
Primary source: TAIR:AT1G22870
Locus tag: AT1G22870
See related: Araport:AT1G22870
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F19G10.17; F19G10_17
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 14

Sequence:: Chromosome: 1; NC_003070.9 (8089267..8094505)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

findings suggest the role of SCYL2A (AT1G22870) and SCYL2B genes in plant cell developmental processes via clathrin-mediated vesicle membrane trafficking
Title: SCYL2 Genes Are Involved in Clathrin-Mediated Vesicle Trafficking and Essential for Plant Growth.

Submit: New GeneRIF Correction

General gene information

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NM_001332562.1

Supported by ESTs:

NM_001332563.1

Supported by ESTs:

NM_001332564.1

Supported by ESTs:

NM_102133.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables clathrin heavy chain binding	IDA Inferred from Direct Assay more info	PubMed
enables protein kinase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
colocalizes_with Golgi apparatus	IDA Inferred from Direct Assay more info	PubMed
colocalizes_with Golgi apparatus	ISS Inferred from Sequence or Structural Similarity more info	PubMed
located_in Golgi membrane	IDA Inferred from Direct Assay more info	PubMed
located_in cytoplasm	ISM Inferred from Sequence Model more info
colocalizes_with late endosome	ISS Inferred from Sequence or Structural Similarity more info	PubMed
located_in late endosome membrane	IDA Inferred from Direct Assay more info	PubMed
colocalizes_with trans-Golgi network	ISS Inferred from Sequence or Structural Similarity more info	PubMed
located_in trans-Golgi network membrane	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: kinase family with ARM repeat domain-containing protein

NP_173700.2

Protein kinase family protein with ARM repeat domain; FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Armadillo-like helical (InterPro:IPR011989), Serine/threonine-protein kinase domain (InterPro:IPR002290), Armadillo-type fold (InterPro:IPR016024), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G71410.1); Has 26365 Blast hits to 24990 proteins in 1293 species: Archae - 12; Bacteria - 3236; Metazoa - 8918; Fungi - 4021; Plants - 3829; Viruses - 24; Other Eukaryotes - 6325 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

8089267..8094505

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_102133.3 → NP_173700.2 kinase family with ARM repeat domain-containing protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_173700.2

Status: REVIEWED

UniProtKB/Swiss-Prot

F4I313, O23135

UniProtKB/TrEMBL

A0A178WAY3

Conserved Domains (2) summary

cd14011
Location:45 → 345

PK_SCY1_like; Pseudokinase domain of Scy1-like proteins

sd00044
Location:431 → 454

HEAT; HEAT repeat [structural motif]
NM_001332562.1 → NP_001322535.1 kinase family with ARM repeat domain-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AUB4
NM_001332563.1 → NP_001322534.1 kinase family with ARM repeat domain-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WAY3, A0A1P8AU94
NM_001332564.1 → NP_001322533.1 kinase family with ARM repeat domain-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WAY3, A0A1P8AUA2