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    glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837540, updated on 18-Sep-2024

    Summary

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    Official Full Name
    glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
    Primary source
    TAIR:AT1G10050
    Locus tag
    AT1G10050
    See related
    Araport:AT1G10050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATXYN2; T27I1.7; T27I1_7
    Summary
    Encodes a putative glycosyl hydrolase family 10 protein (xylanase).
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (3278792..3283631)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene formin-like protein (DUF1005) Neighboring gene ergosterol biosynthesis protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene branched-chain amino acid transaminase 1 Neighboring gene branched-chain amino acid transaminase 2 Neighboring gene Early-responsive to dehydration stress protein (ERD4)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A xylanase, AtXyn1, is predominantly expressed in vascular bundles, and four putative xylanase genes were identified in the Arabidopsis thaliana genome. Suzuki M, et al. Plant Cell Physiol, 2002 Jul. PMID 12154138
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100879.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables endo-1,4-beta-xylanase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in xylan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
    NP_172476.1
    • glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (TAIR:AT1G58370.1); Has 2595 Blast hits to 2245 proteins in 443 species: Archae - 10; Bacteria - 1438; Metazoa - 33; Fungi - 351; Plants - 403; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3278792..3283631
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331878.1 → NP_001322538.1  glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80596
      UniProtKB/TrEMBL
      A0A178W1P5
      Conserved Domains (2) summary
      smart00633
      Location:757 → 1003
      Glyco_10; Glycosyl hydrolase family 10
      pfam02018
      Location:183 → 315
      CBM_4_9; Carbohydrate binding domain

    2. NM_001331879.1 → NP_001322539.1  glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1L8, A0A1P8AUA7

    3. NM_100879.2 → NP_172476.1  glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172476.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80596
      UniProtKB/TrEMBL
      A0A178W1P5
      Conserved Domains (2) summary
      smart00633
      Location:757 → 1003
      Glyco_10; Glycosyl hydrolase family 10
      pfam02018
      Location:183 → 315
      CBM_4_9; Carbohydrate binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80596.1

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