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    TRM82 Transducin/WD40 repeat-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839572, updated on 18-Sep-2024

    Summary

    Official Symbol
    TRM82
    Official Full Name
    Transducin/WD40 repeat-like superfamily protein
    Primary source
    TAIR:AT1G03110
    Locus tag
    AT1G03110
    See related
    Araport:AT1G03110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtTRM82; F10O3.6; F10O3_6; tRNA modification 82
    Summary
    Encodes a gene involved in the modification of nucleosides in tRNA. Mutants have no 7-methylguanosine.
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    Genomic context

    See TRM82 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (749246..751976)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene uncharacterized protein Neighboring gene responsive to abscisic acid 28 Neighboring gene photosystem I subunit D-2 Neighboring gene splicing factor Prp18 family protein

    General gene information

    NM_100193.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within 7-methylguanosine metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in RNA (guanine-N7)-methylation IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within tRNA modification IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Transducin/WD40 repeat-like superfamily protein
    NP_563675.1
    • Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, alpha subunit (TAIR:AT2G21390.1); Has 13545 Blast hits to 7977 proteins in 481 species: Archae - 46; Bacteria - 4157; Metazoa - 4042; Fungi - 2887; Plants - 1145; Viruses - 0; Other Eukaryotes - 1268 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      749246..751976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100193.4NP_563675.1  Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563675.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZV6, Q93WD7
      Conserved Domains (2) summary
      sd00039
      Location:2355
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:23282
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...