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    coiled-coil protein (DUF572) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838283, updated on 18-Sep-2024

    Summary

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    Official Full Name
    coiled-coil protein (DUF572)
    Primary source
    TAIR:AT1G17130
    Locus tag
    AT1G17130
    See related
    Araport:AT1G17130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D23.18; F20D23_18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (5854093..5856697)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ubiquitin-specific protease 15 Neighboring gene cationic amino acid transporter 8 Neighboring gene ncRNA Neighboring gene interactor of constitutive active rops 1 Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A genetic screen implicates a CWC16/Yju2/CCDC130 protein and SMU1 in alternative splicing in Arabidopsis thaliana. Kanno T, et al. RNA, 2017 Jul. PMID 28373290, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_001084081.2
    NM_101573.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil protein (DUF572)
    NP_001077550.1
    • Family of unknown function (DUF572); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT2G32050.1); Has 1391 Blast hits to 1324 proteins in 252 species: Archae - 3; Bacteria - 52; Metazoa - 454; Fungi - 341; Plants - 148; Viruses - 5; Other Eukaryotes - 388 (source: NCBI BLink).
    NP_173156.1
    • Family of unknown function (DUF572); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT2G32050.1); Has 1377 Blast hits to 1314 proteins in 254 species: Archae - 0; Bacteria - 51; Metazoa - 442; Fungi - 351; Plants - 150; Viruses - 5; Other Eukaryotes - 378 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5854093..5856697
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084081.2 → NP_001077550.1  coiled-coil protein (DUF572) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077550.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DXD9, A8MR03
      Conserved Domains (1) summary
      pfam04502
      Location:9 → 336
      DUF572; Family of unknown function (DUF572)

    2. NM_101573.4 → NP_173156.1  coiled-coil protein (DUF572) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173156.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9UV55, A0A654EBL4, Q9SHH1
      Conserved Domains (1) summary
      pfam04502
      Location:9 → 329
      DUF572; Family of unknown function (DUF572)
    Nucleotide Protein
    Heading Accession and Version

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